ImageJ Tutorial

 

Hands-on Tutorial on How to Access and Work with
Remote Sensing Images Using ImageJ

by
Cyndy Erickson and Janet Campbell

Contents

I. Introduction to ImageJ

Launch ImageJ and examine Gulf of Maine satellite images downloaded from the GoMOOS website. Become familiar with several tools and learn about the different images available.

II. Activity One: The Year of the Ocean

Compare, stack, and animate monthly composite images of sea surface temperature and chlorophyll in the Gulf of Maine.

III. Activity Two: Working with Real Satellite Data

Explore and calibrate digital satellite data in an image format. Determine the temperature ranges within the Gulf Stream and over Georges Bank.

IV. Activity Three: How do the sea surface temperatures in an image compare to the temperatures measured on GoMOOS buoys?

Overlay a map of buoy locations onto a sequence of SST images and extract the SST at each buoy. Compare these with SST measured at GoMOOS buoys at the time of the satellite overpass.

V. Activity Four: The Coccolithophore Caper

Import “raw” data and enhance the images to see a coccolithophore bloom in the Gulf of Maine.

Appendices:

A. ImageJ Tools. Excerpts from ImageJ documentation describing the software and different tools.

B. Keyboard Shortcuts. Excerpts from ImageJ documentation describing the different keyboard shortcuts.


Please Note: In this tutorial we used ImageJ for Windows. If you will be using a computer with a different operating system, download the ImageJ software that is compatible with you computer. The ImageJ tutorial can be used with any platform. The only difference is that some of the graphics will have a Windows look to them as opposed to perhaps a Macintosh. (See example below.)


Windows

Macintosh